PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 282aa    MW: 31190.3 Da    PI: 9.6178
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-17176PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.4e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+e l  +v+++G+g Wk I +          R+  ++k++w++
        Lsa018020  5 KQKWTAEEEEALRAGVAKHGTGKWKNIQKDPEfnhflYSRSNIDLKDKWRN 55
                     79************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.111161IPR017930Myb domain
SuperFamilySSF466898.97E-17258IPR009057Homeodomain-like
SMARTSM007175.5E-9459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-15556IPR009057Homeodomain-like
PfamPF002492.1E-9555IPR001005SANT/Myb domain
CDDcd116605.26E-21656No hitNo description
SuperFamilySSF467855.44E-15120200IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005268.2E-17120185IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.105122190IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.2E-13122196IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.9E-10125183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGNPKQKWTA EEEEALRAGV AKHGTGKWKN IQKDPEFNHF LYSRSNIDLK DKWRNMSVSA  60
NGQGPREKSR TPKPKATTDS PATAIPLAIT WTPGSSAAAV VDPASTDVQM DDSSKCLLDG  120
KTASKYNTMI YEALSTLKDP NGSDTSAIVS FIEKRHEVPQ NFRRLLSSRL RRLVAQEKLE  180
KVQNCYRLRR ESANGTKGPI SKPKEIRPRI SQVNSYLGGT LEEAAVAAAY QVAEAENKSF  240
VAAEAVKEAE RVSKMAEEAE AFLQLAKEIY ERCSRGEVVM VA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078025.11e-131PREDICTED: telomere repeat-binding factor 4-like
SwissprotF4IEY41e-76TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLA0A118JW311e-144A0A118JW31_CYNCS; Histone H1/H5
STRINGVIT_11s0016g01890.t011e-122(Vitis vinifera)